MUMmerGPU is an high-throughput parallel pairwise local sequence alignment program. It uses the GPU to simultaneously align multiple query sequences against a single reference sequence stored as a suffix tree.

Michael Schatz and Cole Trapnell from Center for Bioinformatics and Computation Biology, University of Maryland College Park, contributes the MUMmerGPU implementation to Rodinia


  • mummergpu.txt
  • Last modified: 2018/10/03 17:39
  • by root